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1

Dynamical analysis of cellular networks based on the Green's function matrix

Thanneer M. Perumal, Yan Wu, Rudiyanto Gunawan

Journal:

Journal of Theoretical Biology

Year:

2009

Language:

english

File:

PDF, 880 KB

english, 2009

2

Understanding dynamics using sensitivity analysis: caveat and solution

Thanneer M Perumal, Rudiyanto Gunawan

Journal:

BMC Systems Biology

Year:

2011

Language:

english

File:

PDF, 687 KB

english, 2011

3

Detecting cellular reprogramming determinants by differential stability analysis of gene regulatory networks

Crespo, Isaac, Perumal, Thanneer M, Jurkowski, Wiktor, del Sol, Antonio

Journal:

BMC Systems Biology

Year:

2013

Language:

english

File:

PDF, 989 KB

english, 2013

4

Reduction of kinetic models using dynamic sensitivities

Perumal, Thanneer Malai, Madgula Krishna, Sashikant, Tallam, Sai Sandeep, Gunawan, Rudiyanto

Journal:

Computers & Chemical Engineering

Year:

2013

Language:

english

File:

PDF, 718 KB

english, 2013

5

pathPSA: A Dynamical Pathway-Based Parametric Sensitivity Analysis

Perumal, Thanneer Malai, Gunawan, Rudiyanto

Journal:

Industrial & Engineering Chemistry Research

Year:

2014

Language:

english

File:

PDF, 1.74 MB

english, 2014

6

[WORLD SCIENTIFIC Proceedings of the Pacific Symposium - Kohala Coast, Hawaii, USA (4 – 8 January 2016)] Biocomputing 2016 - PERSONALIZED HYPOTHESIS TESTS FOR DETECTING MEDICATION RESPONSE IN PARKINSON DISEASE PATIENTS USING iPHONE SENSOR DATA

CHAIBUB NETO, ELIAS, BOT, BRIAN M., PERUMAL, THANNEER, OMBERG, LARSSON, GUINNEY, JUSTIN, KELLEN, MIKE, KLEIN, ARNO, FRIEND, STEPHEN H., TRISTER, ANDREW D.

Language:

english

File:

PDF, 810 KB

english

7

Gene expression elucidates functional impact of polygenic risk for schizophrenia

Fromer, Menachem, Roussos, Panos, Sieberts, Solveig K, Johnson, Jessica S, Kavanagh, David H, Perumal, Thanneer M, Ruderfer, Douglas M, Oh, Edwin C, Topol, Aaron, Shah, Hardik R, Klei, Lambertus L, Kr

Journal:

Nature Neuroscience

Year:

2016

Language:

english

File:

PDF, 5.63 MB

english, 2016

8

TRIM32 modulates pluripotency entry and exit by directly regulating Oct4 stability

Bahnassawy, Lamia’a, Perumal, Thanneer M., Gonzalez-Cano, Laura, Hillje, Anna-Lena, Taher, Leila, Makalowski, Wojciech, Suzuki, Yutaka, Fuellen, Georg, Sol, Antonio del, Schwamborn, Jens Christian

Journal:

Scientific Reports

Year:

2015

Language:

english

File:

PDF, 2.78 MB

english, 2015

9

INTEGRATIVE NETWORK ANALYSIS OF MULTIPLE ALZHEIMER'S DISEASE RNASEQ STUDIES FROM THE ACCELERATING MEDICINE PARTNERSHIP-ALZHEIMER'S DISEASE CONSORTIUM

Logsdon, Benjamin A., Zhang, Bin, Komashko, Vitalina, Mostafavi, Sara, Chen, Mingming, Perumal, Thanneer M., Funk, Cory, Allen, Mariet, Amberkar, Sandeep, Hide, Winston, Friend, Stephen H., Bennett, D

Journal:

Alzheimer's & Dementia

Year:

2016

Language:

english

File:

PDF, 71 KB

english, 2016

10

COMBING EVIDENCE ACROSS MULTIPLE COHORTS FOR SYSTEMS-BASED TARGET DISCOVERY: THE AMP-AD KNOWLEDGE PORTAL

Dang, Kristen, Perumal, Thanneer M., Allen, Mariet, Funk, Corey, Wang, Minghui, Xu, Jishu, Logsdon, Ben, Yu, Lei, Schuyler, Sarah, Friend, Stephen H., Bennett, David A., Zhang, Bin, Schadt, Eric, de J

Journal:

Alzheimer's & Dementia

Year:

2016

Language:

english

File:

PDF, 50 KB

english, 2016

11

Molecular, phenotypic, and sample-associated data to describe pluripotent stem cell lines and derivatives

Daily, Kenneth, Ho Sui, Shannan J., Schriml, Lynn M., Dexheimer, Phillip J., Salomonis, Nathan, Schroll, Robin, Bush, Stacy, Keddache, Mehdi, Mayhew, Christopher, Lotia, Samad, Perumal, Thanneer M., D

Journal:

Scientific Data

Year:

2017

Language:

english

File:

PDF, 929 KB

english, 2017

12

UNDERSTANDING THE MOLECULAR ETIOLOGY OF ALZHEIMER'S DISEASE ACROSS SEVEN DIFFERENT BRAIN REGIONS

Perumal, Thanneer M., Dang, Kristen, Eddy, James, Logsdon, Benjamin A., Omberg, Larsson, Mangravite, Lara M.

Journal:

Alzheimer's & Dementia

Year:

2017

Language:

english

File:

PDF, 157 KB

english, 2017

13

CROSS STUDY INTEGRATIVE NETWORK ANALYSIS IDENTIFICATION OF AD DISEASE ETIOLOGY

Logsdon, Benjamin A., Perumal, Thanneer M., Sieberts, Solveig K., Omberg, Larsson, Mangravite, Lara M.

Journal:

Alzheimer's & Dementia

Year:

2017

Language:

english

File:

PDF, 345 KB

english, 2017

14

A community approach to mortality prediction in sepsis via gene expression analysis

Sweeney, Timothy E., Perumal, Thanneer M., Henao, Ricardo, Nichols, Marshall, Howrylak, Judith A., Choi, Augustine M., Bermejo-Martin, Jesús F., Almansa, Raquel, Tamayo, Eduardo, Davenport, Emma E., B

Journal:

Nature Communications

Year:

2018

Language:

english

File:

PDF, 1.38 MB

english, 2018

15

Unsupervised Analysis of Transcriptomics in Bacterial Sepsis Across Multiple Datasets Reveals Three Robust Clusters

Sweeney, Timothy E., Azad, Tej D., Donato, Michele, Haynes, Winston A., Perumal, Thanneer M., Henao, Ricardo, Bermejo-Martin, Jesús F., Almansa, Raquel, Tamayo, Eduardo, Howrylak, Judith A., Choi, Aug

Journal:

Critical Care Medicine

Year:

2018

Language:

english

File:

PDF, 1.36 MB

english, 2018

16

Landscape of Conditional eQTL in Dorsolateral Prefrontal Cortex and Co-localization with Schizophrenia GWAS

Dobbyn, Amanda, Huckins, Laura M., Boocock, James, Sloofman, Laura G., Glicksberg, Benjamin S., Giambartolomei, Claudia, Hoffman, Gabriel E., Perumal, Thanneer M., Girdhar, Kiran, Jiang, Yan, Raj, Tow

Journal:

The American Journal of Human Genetics

Year:

2018

Language:

english

File:

PDF, 1.60 MB

english, 2018

17

Elucidating Cellular Population Dynamics by Molecular Density Function Perturbations

Perumal, Thanneer, Gunawan, Rudiyanto

Journal:

Year:

2018

Language:

english

File:

PDF, 3.61 MB

english, 2018

18

SYSTEMS BIOLOGY RANKING OF CANDIDATE ALZHEIMER’S DRIVER GENES IDENTIFIES NEW GENETIC DRIVERS OF ALZHEIMER’S DISEASE ETIOLOGY

Logsdon, Benjamin A., Perumal, Thanneer M., Daily, Kenneth, Sieberts, Solveig K., Omberg, Larsson, Mangravite, Lara M., Preuss, Christoph, Carter, Gregory W.

Journal:

Alzheimer's & Dementia

Year:

2018

Language:

english

File:

PDF, 97 KB

english, 2018

19

[ACM Press the 2018 ACM International Joint Conference and 2018 International Symposium - Singapore, Singapore (2018.10.08-2018.10.12)] Proceedings of the 2018 ACM International Joint Conference and 2018 International Symposium on Pervasive and Ubiquitous Computing and Wearable Computers - UbiComp '18 - Remote Assessment, in Real-World Setting, of Tremor Severity in Parkinson's Disease Patients Using Smartphone Inertial Sensors

Perumal, Thanneer M., Tummalacherla, Meghasyam, Snyder, Phil, Neto, Elias Chaibub, Dorsey, E. Ray, Mangravite, Lara, Omberg, Larsson

Year:

2018

File:

PDF, 254 KB

2018

20

Identifying and ranking potential driver genes of Alzheimer’s disease using multiview evidence aggregation

Mukherjee, Sumit, Perumal, Thanneer M, Daily, Kenneth, Sieberts, Solveig K, Omberg, Larsson, Preuss, Christoph, Carter, Gregory W, Mangravite, Lara M, Logsdon, Benjamin A

Journal:

Year:

2019

Language:

english

File:

PDF, 364 KB

english, 2019

21

[ACM Press the 25th ACM SIGKDD International Conference - Anchorage, AK, USA (2019.08.04-2019.08.08)] Proceedings of the 25th ACM SIGKDD International Conference on Knowledge Discovery & Data Mining - KDD '19 - A Permutation Approach to Assess Confounding in Machine Learning Applications for Digital Health

Chaibub Neto, Elias, Pratap, Abhishek, Perumal, Thanneer M., Tummalacherla, Meghasyam, Bot, Brian M., Mangravite, Lara, Omberg, Larsson

Year:

2019

Language:

english

File:

PDF, 12.13 MB

english, 2019

22

Detecting the impact of subject characteristics on machine learning-based diagnostic applications

Chaibub Neto, Elias, Pratap, Abhishek, Perumal, Thanneer M., Tummalacherla, Meghasyam, Snyder, Phil, Bot, Brian M., Trister, Andrew D., Friend, Stephen H., Mangravite, Lara, Omberg, Larsson

Journal:

npj Digital Medicine

Year:

2019

Language:

english

File:

PDF, 663 KB

english, 2019

23

P3-142: STRATIFICATION OF ALZHEIMER'S PATIENTS USING POSTMORTEM BRAIN CO-EXPRESSION DATA REVEALS NOVEL GENETIC MODIFIERS MEDIATING INFLAMMATORY AGING

Preuss, Christoph, Logsdon, Benjamin A., Milind, Nikhil, Harber, Annat, Uyar, Asli, Pandey, Ravi S., Perumal, Thanneer M., Mangravite, Lara M., Howell, Gareth, Sasner, Michael, Mukherjee, Shubhabrata,

Journal:

Alzheimer's & Dementia

Year:

2019

File:

PDF, 104 KB

2019

24

P4-113: AGORA: A PLATFORM FOR THE DEMOCRATIZATION OF ALZHEIMER'S DISEASE TARGET EVIDENCE

Greenwood, Anna K., Daily, Kenneth, Mukherjee, Sumit, Perumal, Thanneer M., Woo, Kara H., Sieberts, Solveig K., Simon, Stockard, Dembogurski, Renan, Ferreyra, Diego, Peters, Mette A., Do, Khai, Hoff,

Journal:

Alzheimer's & Dementia

Year:

2019

File:

PDF, 149 KB

2019

25

P2-105: A NOVEL SYSTEMS BIOLOGY APPROACH TO EVALUATE MOUSE MODELS OF LATE ONSET ALZHEIMER'S DISEASE: NCOUNTER MOUSE AD PANEL

Preuss, Christoph, Pandey, Ravi S., Fine, Alexander, Uyar, Asli, Logsdon, Benjamin A., Perumal, Thanneer M., Piazza, Erin, Rullo, Elizabeth, Kuhar, Jamie, Bailey, Christina, Mangravite, Lara M., Howel

Journal:

Alzheimer's & Dementia

Year:

2019

File:

PDF, 164 KB

2019

26

Meta-Analysis of the Alzheimerâs Disease Human Brain Transcriptome and Functional Dissection in Mouse Models

Wan, Ying-Wooi, Al-Ouran, Rami, Mangleburg, Carl G., Perumal, Thanneer M., Lee, Tom V., Allison, Katherine, Swarup, Vivek, Funk, Cory C., Gaiteri, Chris, Allen, Mariet, Wang, Minghui, Neuner, Sarah M.

Journal:

Year:

2020

File:

PDF, 4.09 MB

2020

27

Large eQTL meta-analysis reveals differing patterns between cerebral cortical and cerebellar brain regions

Sieberts, Solveig K., Perumal, Thanneer M., Carrasquillo, Minerva M., Allen, Mariet, Reddy, Joseph S., Hoffman, Gabriel E., Dang, Kristen K., Calley, John, Ebert, Philip J., Eddy, James, Wang, Xue, Gr

Journal:

Scientific Data

Year:

2020

File:

PDF, 1.50 MB

2020

28

A novel systems biology approach to evaluate mouse models of late-onset Alzheimerâs disease

Preuss, Christoph, Pandey, Ravi, Piazza, Erin, Fine, Alexander, Uyar, Asli, Perumal, Thanneer, Garceau, Dylan, Kotredes, Kevin P., Williams, Harriet, Mangravite, Lara M., Lamb, Bruce T., Oblak, Adrian

Journal:

Molecular Neurodegeneration

Year:

2020

File:

PDF, 3.23 MB

2020

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